About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6689055_6690237_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6689055 - 6690237
Intron Length:
1183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TACTTTTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCAAT
U12 Branch Point Sequence:
AATTCTTTTACT
Flanking Amino Acid:
DIVLAHHFGHEELQANLDLI
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
83.5
27.9
Major BPS
71.8
0.54
1.2
79
32.5
Major PPT
75.8
0.58
0.9
71.7
37.9
Minor 5ss
38.5
-1.3
2.8
50.4
39.3
Minor BPS
70.5
0.73
1.6
83.43
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002691
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033463
6682238 - 6735163
52926
ENSAPLT00000033449
6683835 - 6711968
28134
ENSAPLT00000002741
6680858 - 6735163
54306
ENSAPLT00000044939
6682238 - 6735163
52926