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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6690903_6692569_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6690903 - 6692569
Intron Length:
1667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TCTCTCTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TCTCTCTCCACA
Flanking Amino Acid:
AGAYVLSRCALSHPDLVEGL
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
79.3
34.5
Major BPS
68
0.45
1
57.8
39
Major PPT
81.2
0.7
0.7
75.9
26.2
Minor 5ss
42.5
-0.8
2.8
60.5
37.7
Minor BPS
48.9
-0
2
64.43
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002691
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033463
6682238 - 6735163
52926
ENSAPLT00000033449
6683835 - 6711968
28134
ENSAPLT00000002741
6680858 - 6735163
54306
ENSAPLT00000044939
6682238 - 6735163
52926