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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6692631_6692951_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6692631 - 6692951
Intron Length:
321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
GCCTATATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAA
U12 Branch Point Sequence:
TGATTGTGAAAT
Flanking Amino Acid:
EMLPAVLTHLNLKSFIGIGL
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
79
35.3
Major BPS
72.1
0.55
1.2
63.4
44.3
Major PPT
73.8
0.54
0.9
69.6
40.1
Minor 5ss
40.5
-1.1
3
54
37
Minor BPS
46.7
-0.1
2.2
67.71
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002691
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033463
6682238 - 6735163
52926
ENSAPLT00000033449
6683835 - 6711968
28134
ENSAPLT00000002741
6680858 - 6735163
54306
ENSAPLT00000044939
6682238 - 6735163
52926