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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6695018_6707841_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6695018 - 6707841
Intron Length:
12824

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
GCACATGTAATG
Flanking Amino Acid:
ARNFQDFDCQEHDIETAFGV
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
85.8
0.81
0.7
80.7
24.4
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
40.3
-0.8
2
38.98
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002691
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033449
6683835 - 6711968
28134
ENSAPLT00000002741
6680858 - 6735163
54306
ENSAPLT00000044939
6682238 - 6735163
52926