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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6695018_6711911_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6695018 - 6711911
Intron Length:
16894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACTA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
GCACATGTAATG
Flanking Amino Acid:
TEIKPLLNDKEHDIETAFGV
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
73.6
37
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
85.8
0.81
0.7
80.7
24.4
Minor 5ss
35.6
-1.6
3.2
48.3
47.2
Minor BPS
40.3
-0.8
2
38.98
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002691
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033463
6682238 - 6735163
52926