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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6707878_6711911_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6707878 - 6711911
Intron Length:
4034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
TTTTTGTTAACA
Flanking Amino Acid:
TEIKPLLNDKNAARNFQDFD
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
73.6
37
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
84.4
0.77
0.9
81
35.4
Minor 5ss
35.6
-1.6
3.2
48.3
47.2
Minor BPS
72.4
0.7
2
86.69
32.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002691
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002741
6680858 - 6735163
54306
ENSAPLT00000044939
6682238 - 6735163
52926
ENSAPLT00000033449
6683835 - 6711968
28134