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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6712018_6734214_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
6712018 - 6734214
Intron Length:
22197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGTCTGAG
5'SS Class:
weak_major
3'SS Sequence:
GCTTTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGTTTCTAAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.6
0.23
1.2
52.3
40.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
82.8
0.74
0.9
80.2
37.3
Minor 5ss
38.7
-1.3
3.1
48.3
47.8
Minor BPS
70.4
0.64
1.6
79.59
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002691
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044939
6682238 - 6735163
52926