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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_671961_673305_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
671961 - 673305
Intron Length:
1345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTATGTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGTTTTATGT
Flanking Amino Acid:
TLDNKLLQTDDEEEAGLLEL
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
86.5
28.5
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
55.7
0.13
1.8
70.4
44.5
Minor 5ss
40.8
-1
2.8
57.5
39.6
Minor BPS
50.6
0.1
2
74.38
43.4

Associated Gene:

Gene:
CSE1L
Ensembl Gene ID:
ENSAPLG00000010368
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010876
659079 - 678463
19385