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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_674285_674560_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
674285 - 674560
Intron Length:
276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAC
U12 Branch Point Sequence:
TGTTACTTCACT
Flanking Amino Acid:
FALPLTNLFKATIELCSTHA
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
85.4
30.8
Major BPS
68.7
0.46
1
71.3
34
Major PPT
83.9
0.76
0.8
77.1
37.1
Minor 5ss
47.8
-0.2
2.5
68.9
41.7
Minor BPS
66.1
0.59
2
86
39.7

Associated Gene:

Gene:
CSE1L
Ensembl Gene ID:
ENSAPLG00000010368
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010876
659079 - 678463
19385