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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_674652_674968_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
674652 - 674968
Intron Length:
317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGGAA
5'SS Class:
major
3'SS Sequence:
TTTCACTTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCTTTTCACT
Flanking Amino Acid:
VLRTAHSLFKRYRHEFKSNA
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
63.8
35.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77.7
0.62
1
77.2
36.7
Minor 5ss
34.7
-1.7
3.5
46.2
49
Minor BPS
64.5
0.54
1.7
84.55
36.3

Associated Gene:

Gene:
CSE1L
Ensembl Gene ID:
ENSAPLG00000010368
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010876
659079 - 678463
19385