Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_675115_675529_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

675115 - 675529

Intron Length:

415

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACAAGG

5'SS Class:

major

3'SS Sequence:

ATTTCCTTTCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATCAT

U12 Branch Point Sequence:

TATCATGTAATG

Flanking Amino Acid:

LSSPEQIQKQLSDAISIIGR

Intron Amino Acid Position:

111

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.3

0.62

1.2

66.4

45.1

Major BPS

79.4

0.73

80.1

Major PPT

86.2

0.81

0.8

77.7

Minor 5ss

38.4

-1.3

2.9

49.5

46.3

Minor BPS

45.6

-0.4

2.1

54.77

40.7

Associated Gene:

Gene:

CSE1L

Ensembl Gene ID:

ENSAPLG00000010368

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010876

659079 - 678463

19385