Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6759931_6763205_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6759931 - 6763205

Intron Length:

3275

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGAGAA

5'SS Class:

strong_major

3'SS Sequence:

ATTTGCTCTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTGAT

U12 Branch Point Sequence:

TTTATCTGATTT

Flanking Amino Acid:

WSKVICALTSRLLRFTYGPS

Intron Amino Acid Position:

246

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

71.3

34.5

Major BPS

82.5

0.81

0.8

71.4

36.6

Major PPT

75.9

0.58

0.9

67.2

39.8

Minor 5ss

28.3

-2.5

3.5

37.3

47.4

Minor BPS

55.3

0.24

1.7

77.21

39.5

Associated Gene:

Gene:

RALGAPB

Ensembl Gene ID:

ENSAPLG00000002476

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023498

6752681 - 6808058

55378

ENSAPLT00000002581

6752681 - 6807305

54625