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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6768291_6775117_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6768291 - 6775117
Intron Length:
6827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAC
U12 Branch Point Sequence:
TTGACAAATACA
Flanking Amino Acid:
NGINRDSSMTAIATQASVEF
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
86
29.7
Major BPS
71.3
0.53
1.1
63.1
44.5
Major PPT
90.1
0.9
0.6
84.1
30.8
Minor 5ss
41.2
-1
3
56.7
42
Minor BPS
39
-0.8
2.3
54.39
43.5

Associated Gene:

Gene:
RALGAPB
Ensembl Gene ID:
ENSAPLG00000002476
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023498
6752681 - 6808058
55378