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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_677822_678367_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
677822 - 678367
Intron Length:
546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TATTCTCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
TATTCTCTTACA
Flanking Amino Acid:
LDPDPAIRRPAEKFLESVEG
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
28.5
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
86.6
0.82
0.7
80.7
31
Minor 5ss
34.5
-1.8
3.3
45.9
43.7
Minor BPS
56.6
0.2
2
73.11
38.2

Associated Gene:

Gene:
CSE1L
Ensembl Gene ID:
ENSAPLG00000010368
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010876
659079 - 678463
19385