Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6788201_6788555_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6788201 - 6788555

Intron Length:

355

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTATGTAAT

5'SS Class:

strong_major

3'SS Sequence:

TTCTCATTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TCTCTCGTAACT

Flanking Amino Acid:

VKDAAEATLTCIMQLLGAFP

Intron Amino Acid Position:

917

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.77

0.9

81.4

31.6

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

86.1

0.81

0.7

80.9

29.8

Minor 5ss

43.6

-0.7

2.6

56.3

42.5

Minor BPS

60.6

0.41

80.65

41.4

Associated Gene:

Gene:

RALGAPB

Ensembl Gene ID:

ENSAPLG00000002476

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023498

6752681 - 6808058

55378

ENSAPLT00000002581

6752681 - 6807305

54625