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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6790650_6792867_F

Intron Information:

Intron Rank:
20
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6790650 - 6792867
Intron Length:
2218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTCTATC
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCCCAT
U12 Branch Point Sequence:
TTTTTTTTGACA
Flanking Amino Acid:
LPRGAKANQKTFVPEPRPAP
Intron Amino Acid Position:
1016

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.9
0.28
1.4
68.8
42.3
Major BPS
59.9
0.25
1.3
70.1
37
Major PPT
89
0.88
0.8
87.5
30
Minor 5ss
47.3
-0.3
2.3
63.5
40.9
Minor BPS
79.3
0.92
1
85.48
26.3

Associated Gene:

Gene:
RALGAPB
Ensembl Gene ID:
ENSAPLG00000002476
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023498
6752681 - 6808058
55378
ENSAPLT00000002581
6752681 - 6807305
54625