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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_684856_685654_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
684856 - 685654
Intron Length:
799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCTGATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTCTCTGATA
Flanking Amino Acid:
TKTLKINDEKFRAHASTYYP
Intron Amino Acid Position:
1754

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
100
1.24
0.5
100
0
Major PPT
72.4
0.51
1
69.3
37
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
59.3
0.29
1.6
71.6
34.2

Associated Gene:

Gene:
ARFGEF2
Ensembl Gene ID:
ENSAPLG00000010118
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042920
684618 - 716787
32170
ENSAPLT00000010669
684679 - 715920
31242