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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6852128_6854552_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6852128 - 6854552
Intron Length:
2425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGCTGGCG
5'SS Class:
weak_major
3'SS Sequence:
GTCCTTCAGCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTCTAAC
U12 Branch Point Sequence:
CTGTCCTTCAGC
Flanking Amino Acid:
SRARPKKSRWEQGPTPVEKK
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.9
0.09
1.1
41.4
39.5
Major BPS
66.8
0.42
1.2
69.6
35.5
Major PPT
52.9
0.07
1.2
52.8
41.1
Minor 5ss
22.7
-3.1
3.3
20.9
37.6
Minor BPS
53.8
0.1
2.1
65.47
46.4

Associated Gene:

Gene:
CHD6
Ensembl Gene ID:
ENSAPLG00000015592
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016290
6848983 - 6864728
15746