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Intron Name: Anas_platyrhynchos_platyrhynchos_21_6856933_6857678_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6856933 - 6857678

Intron Length:

746

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GGA|GCCAGCGGG

5'SS Class:

weak_major

3'SS Sequence:

GTTGTTGCCCAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGTCTAT

U12 Branch Point Sequence:

GCTTGTCTATCT

Flanking Amino Acid:

MVQKEVSDRGGFFGHVVLIF

Intron Amino Acid Position:

297

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

53.8

0.09

1.3

50.6

43.1

Major BPS

58.6

0.22

1.4

58.5

47.9

Major PPT

59.3

0.21

1.1

56.5

43.7

Minor 5ss

22.1

-3.2

3.9

25.8

37.8

Minor BPS

44.5

-0.3

2.2

64.82

45.8

Associated Gene:

Gene:

CHD6

Ensembl Gene ID:

ENSAPLG00000015592

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016290

6848983 - 6864728

15746