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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6859151_6859416_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6859151 - 6859416
Intron Length:
266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGCAC
U12 Branch Point Sequence:
GAGCCCTGCACT
Flanking Amino Acid:
AHTKDPDTGEEVTHYLVKWC
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
52.5
0.06
1.4
65.3
41.6
Major PPT
72.1
0.5
1
65.3
41.1
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
48.3
-0
1.9
64.79
44.7

Associated Gene:

Gene:
CHD6
Ensembl Gene ID:
ENSAPLG00000015592
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016290
6848983 - 6864728
15746