About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6859967_6860595_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6859967 - 6860595
Intron Length:
629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
CCCATCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
GCTGCATTAACC
Flanking Amino Acid:
MNWLLFNWYNRKNCILADEM
Intron Amino Acid Position:
465

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
75.2
0.57
0.8
68.6
31.7
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
60.8
0.32
1.8
68.26
43

Associated Gene:

Gene:
CHD6
Ensembl Gene ID:
ENSAPLG00000015592
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016290
6848983 - 6864728
15746