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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6860840_6861298_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6860840 - 6861298
Intron Length:
459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACTGAC
5'SS Class:
major
3'SS Sequence:
TATGTCTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TACATTTTATGT
Flanking Amino Acid:
QYEMVYRDSQGNPLPGIFKF
Intron Amino Acid Position:
547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.1
71.9
33.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
70.9
0.47
0.9
62.9
39.3
Minor 5ss
33.1
-1.9
3.2
42.9
44.7
Minor BPS
46.1
-0.2
1.8
60.64
43.5

Associated Gene:

Gene:
CHD6
Ensembl Gene ID:
ENSAPLG00000015592
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016290
6848983 - 6864728
15746