Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6863256_6863673_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6863256 - 6863673

Intron Length:

418

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGGGCT

5'SS Class:

major

3'SS Sequence:

TCTCACCTGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAC

U12 Branch Point Sequence:

CCCTTCTCACCT

Flanking Amino Acid:

KCCNHPYLINGAEEKILEDF

Intron Amino Acid Position:

739

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.1

0.66

0.9

68.3

36.4

Major BPS

0.87

0.8

85.6

Major PPT

70.2

0.46

65.6

35.7

Minor 5ss

26.6

-2.7

3.5

35.6

42.2

Minor BPS

48.3

-0

1.9

62.74

47.7

Associated Gene:

Gene:

CHD6

Ensembl Gene ID:

ENSAPLG00000015592

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016290

6848983 - 6864728

15746