Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6864481_6864633_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6864481 - 6864633

Intron Length:

153

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

TGG|GCCAGCCTG

5'SS Class:

major

3'SS Sequence:

GTGCCCTGGGGAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGCTCAG

U12 Branch Point Sequence:

GAGAGCTGACAG

Flanking Amino Acid:

WNPQNDLQVMVGADLAVVGE

Intron Amino Acid Position:

877

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.5

0.41

1.3

58.1

46.1

Major BPS

55.8

0.14

1.6

65.3

43.7

Major PPT

44.5

-0.3

1.7

46.1

41.4

Minor 5ss

26.1

-2.7

3.9

31.2

42.3

Minor BPS

35.5

-1.2

1.9

32.42

39.7

Associated Gene:

Gene:

CHD6

Ensembl Gene ID:

ENSAPLG00000015592

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016290

6848983 - 6864728

15746