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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_687891_688128_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
687891 - 688128
Intron Length:
238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
AATTTTATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTGCTCTAAATT
Flanking Amino Acid:
MEEDSAERHLDLDLDRQSLS
Intron Amino Acid Position:
1530

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
80.7
31.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75.9
0.58
0.9
67.8
42.6
Minor 5ss
36.5
-1.5
3.6
53.2
45
Minor BPS
60.5
0.41
1.7
76.51
40.7

Associated Gene:

Gene:
ARFGEF2
Ensembl Gene ID:
ENSAPLG00000010118
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042920
684618 - 716787
32170
ENSAPLT00000010669
684679 - 715920
31242