Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_689350_689809_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

689350 - 689809

Intron Length:

460

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAATAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTGTCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

TTTTTTGTCACA

Flanking Amino Acid:

NMKLPEQQTEKSEWMTTTCN

Intron Amino Acid Position:

1420

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.7

0.77

0.9

76.3

28.1

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

87.5

0.84

0.8

83.5

31.6

Minor 5ss

36.6

-1.5

3.1

46.9

48.4

Minor BPS

49.7

-0

2.3

73.92

38.7

Associated Gene:

Gene:

ARFGEF2

Ensembl Gene ID:

ENSAPLG00000010118

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042920

684618 - 716787

32170

ENSAPLT00000010669

684679 - 715920

31242