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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6901104_6901509_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6901104 - 6901509
Intron Length:
406

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAT|GCGGGGAGC
5'SS Class:
major
3'SS Sequence:
CTTTCCTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAG
U12 Branch Point Sequence:
CCCCCCTCAGCG
Flanking Amino Acid:
GLGQGRDGEALHWLACA
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64
0.33
1.3
65.3
35.4
Major BPS
48.4
-0.1
1.5
56.9
40.5
Major PPT
79.5
0.66
0.9
76.6
31.9
Minor 5ss
17.9
-3.7
3.9
28.4
36.8
Minor BPS
45
-0.5
1.9
44.75
47.1

Associated Gene:

Gene:
RBL1
Ensembl Gene ID:
ENSAPLG00000014817
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015493
6901083 - 6928847
27765