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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6901644_6902233_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6901644 - 6902233
Intron Length:
590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGACCTC
5'SS Class:
weak_major
3'SS Sequence:
TGTTTCTTTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
GTTTCTTTTAAG
Flanking Amino Acid:
LTRILRSAKLSLIQFFSKMK
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.3
0.17
1.3
52.5
44.7
Major BPS
62
0.3
1
62.3
30.4
Major PPT
79.1
0.65
1
83.4
32
Minor 5ss
36.7
-1.5
3.4
50.8
45.8
Minor BPS
56.9
0.07
1.8
65.37
42.1

Associated Gene:

Gene:
RBL1
Ensembl Gene ID:
ENSAPLG00000014817
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017749
6901102 - 6920064
18963
ENSAPLT00000017510
6900580 - 6928847
28268
ENSAPLT00000015493
6901083 - 6928847
27765
ENSAPLT00000038231
6901269 - 6928847
27579