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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6913303_6914810_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6913303 - 6914810
Intron Length:
1508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TGTTCTGCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTTATACAAAC
Flanking Amino Acid:
APSEQLITIFESCARSPMES
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
74.4
36
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
76.2
0.59
0.9
74.1
36.7
Minor 5ss
37.3
-1.4
2.6
40.4
39.1
Minor BPS
44.1
-0.4
2
57.94
40.4

Associated Gene:

Gene:
RBL1
Ensembl Gene ID:
ENSAPLG00000014817
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017749
6901102 - 6920064
18963
ENSAPLT00000017510
6900580 - 6928847
28268
ENSAPLT00000015493
6901083 - 6928847
27765
ENSAPLT00000038231
6901269 - 6928847
27579