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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6914924_6915469_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6914924 - 6915469
Intron Length:
546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTAAATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGATTTTAAAT
Flanking Amino Acid:
STDEQPGSHIDFAVNRLKLA
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
79.9
32.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.5
0.73
0.9
79.2
38
Minor 5ss
42.2
-0.9
2.8
58.8
45.4
Minor BPS
64
0.52
1.4
77.29
39.3

Associated Gene:

Gene:
RBL1
Ensembl Gene ID:
ENSAPLG00000014817
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038231
6901269 - 6928847
27579
ENSAPLT00000017749
6901102 - 6920064
18963
ENSAPLT00000017510
6900580 - 6928847
28268
ENSAPLT00000015493
6901083 - 6928847
27765