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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6915574_6916437_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6915574 - 6916437
Intron Length:
864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
GTAATCTCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
TTTTCTGTAATC
Flanking Amino Acid:
TRRLHGKDMTALLEQDVFHR
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
76.6
33.9
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
74.4
0.55
0.9
70.4
40.9
Minor 5ss
38
-1.4
2.8
52.2
44.4
Minor BPS
67.7
0.53
2
81.67
33.1

Associated Gene:

Gene:
RBL1
Ensembl Gene ID:
ENSAPLG00000014817
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028342
6913205 - 6928847
15643
ENSAPLT00000017749
6901102 - 6920064
18963
ENSAPLT00000017510
6900580 - 6928847
28268
ENSAPLT00000015493
6901083 - 6928847
27765
ENSAPLT00000038231
6901269 - 6928847
27579