Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6916576_6919890_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6916576 - 6919890

Intron Length:

3315

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATACA

5'SS Class:

strong_major

3'SS Sequence:

TTGTTACCATTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTGTAT

U12 Branch Point Sequence:

GTCTTGTTACCA

Flanking Amino Acid:

LDLRPFYFYKVIEVLIRSEE

Intron Amino Acid Position:

389

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.7

0.89

0.9

83.1

28.6

Major BPS

71.5

0.53

1.4

71.7

44.6

Major PPT

69.4

0.44

0.9

68.9

37.4

Minor 5ss

35.4

-1.7

2.7

43.5

43.6

Minor BPS

47.9

-0.1

2.3

62.92

43.8

Associated Gene:

Gene:

RBL1

Ensembl Gene ID:

ENSAPLG00000014817

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017510

6900580 - 6928847

28268

ENSAPLT00000015493

6901083 - 6928847

27765

ENSAPLT00000038231

6901269 - 6928847

27579

ENSAPLT00000028342

6913205 - 6928847

15643

ENSAPLT00000017749

6901102 - 6920064

18963