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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6920368_6921860_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6920368 - 6921860
Intron Length:
1493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCATACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
CTTTGCATACTA
Flanking Amino Acid:
RTDLGGTLRRDLQPLSPISV
Intron Amino Acid Position:
489

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
76.7
34.9
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
67.4
0.39
1
60.3
40.3
Minor 5ss
49.4
-0
2.4
57.9
46.7
Minor BPS
46.3
-0.2
2.2
63.54
43.4

Associated Gene:

Gene:
RBL1
Ensembl Gene ID:
ENSAPLG00000014817
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038231
6901269 - 6928847
27579
ENSAPLT00000028342
6913205 - 6928847
15643
ENSAPLT00000017510
6900580 - 6928847
28268
ENSAPLT00000015493
6901083 - 6928847
27765