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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6922128_6923106_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6922128 - 6923106
Intron Length:
979

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGAATT
5'SS Class:
major
3'SS Sequence:
CTTTCATCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTTCTTTCATC
Flanking Amino Acid:
AGQKVTIPLHGIAHEMGGIT
Intron Amino Acid Position:
578

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
0.9
79
34.3
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
82.7
0.74
0.8
74
35.6
Minor 5ss
45.6
-0.5
2.9
63.5
42.1
Minor BPS
70.8
0.64
1.7
81.67
33.1

Associated Gene:

Gene:
RBL1
Ensembl Gene ID:
ENSAPLG00000014817
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028342
6913205 - 6928847
15643
ENSAPLT00000017510
6900580 - 6928847
28268
ENSAPLT00000015493
6901083 - 6928847
27765
ENSAPLT00000038231
6901269 - 6928847
27579