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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6924932_6925449_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6924932 - 6925449
Intron Length:
518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACATGC
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TGGTCTTCAATA
Flanking Amino Acid:
LLCAFYIMAKVTKEERTFQD
Intron Amino Acid Position:
697

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.2
66.9
40
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
95
1.01
0.6
88.4
28.7
Minor 5ss
43.8
-0.7
2.9
60
44.6
Minor BPS
61.9
0.37
1.5
68.11
38.8

Associated Gene:

Gene:
RBL1
Ensembl Gene ID:
ENSAPLG00000014817
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015493
6901083 - 6928847
27765
ENSAPLT00000038231
6901269 - 6928847
27579
ENSAPLT00000028342
6913205 - 6928847
15643
ENSAPLT00000017510
6900580 - 6928847
28268