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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6925797_6927678_F

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
6925797 - 6927678
Intron Length:
1882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTACA
5'SS Class:
strong_major
3'SS Sequence:
GGAAGATCTGCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GACTCAT
U12 Branch Point Sequence:
TCATCTGTGAAA
Flanking Amino Acid:
NKNQDVEMTEAEKSSESGTE
Intron Amino Acid Position:
784

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
80.7
33.8
Major BPS
69.4
0.48
1.2
71.6
36.4
Major PPT
57.7
0.17
1.1
47.7
44.8
Minor 5ss
34.6
-1.7
2.9
43
44
Minor BPS
47
-0.2
2.1
59.5
40.6

Associated Gene:

Gene:
RBL1
Ensembl Gene ID:
ENSAPLG00000014817
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017510
6900580 - 6928847
28268