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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6928408_6928676_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6928408 - 6928676
Intron Length:
269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAAAAT
5'SS Class:
major
3'SS Sequence:
TTCTTGATCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGTTTTTAAAT
Flanking Amino Acid:
LYKFNGSPSKSLKDINNMIK
Intron Amino Acid Position:
881

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
74
36.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.2
0.64
0.9
72.6
36.4
Minor 5ss
33.1
-1.9
3.4
48
47.7
Minor BPS
72.8
0.79
1.3
84.4
36.4

Associated Gene:

Gene:
RBL1
Ensembl Gene ID:
ENSAPLG00000014817
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038231
6901269 - 6928847
27579
ENSAPLT00000028342
6913205 - 6928847
15643
ENSAPLT00000017510
6900580 - 6928847
28268