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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6933581_6935834_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
6933581 - 6935834
Intron Length:
2254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGATGC
5'SS Class:
major
3'SS Sequence:
ATTTTATTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTATTTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
0.9
64.7
36.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.4
0.73
0.8
74.9
39.5
Minor 5ss
38.9
-1.2
3
50.4
46.2
Minor BPS
57.3
0.31
1.6
74.19
37.2

Associated Gene:

Gene:
SAMHD1
Ensembl Gene ID:
ENSAPLG00000014604
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041120
6932929 - 6955479
22551