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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6934107_6935842_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6934107 - 6935842
Intron Length:
1736

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGG|GCACCTCCA
5'SS Class:
major
3'SS Sequence:
TCTAGCCTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTATTTTATTT
Flanking Amino Acid:
ASICSASLARDERLKVLACL
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.8
0.28
1.4
55.3
43
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
71.6
0.49
0.9
61.7
39.8
Minor 5ss
28.2
-2.5
3.9
33.4
41.7
Minor BPS
57.3
0.31
1.6
74.19
37.2

Associated Gene:

Gene:
SAMHD1
Ensembl Gene ID:
ENSAPLG00000014604
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015235
6933971 - 6954372
20402