About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6937957_6939092_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6937957 - 6939092
Intron Length:
1136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGTAA
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTGCGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
ASHNRFEHSLGVGYLAGCLV
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
71.9
36.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
65.9
0.36
1.1
61
40.3
Minor 5ss
35.6
-1.6
3.2
38
46.9
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
SAMHD1
Ensembl Gene ID:
ENSAPLG00000014604
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041120
6932929 - 6955479
22551
ENSAPLT00000039187
6935835 - 6955079
19245
ENSAPLT00000015235
6933971 - 6954372
20402