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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6952144_6952503_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6952144 - 6952503
Intron Length:
360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTCTTT
5'SS Class:
major
3'SS Sequence:
CTTTATTCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TGTTCTTTATTC
Flanking Amino Acid:
SKAVKISKEQVSRLLPRIFA
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
71.6
40.9
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
70
0.45
1
70.8
33.5
Minor 5ss
48.5
-0.1
3.2
73.2
43.6
Minor BPS
67.2
0.52
1.5
74.74
36.3

Associated Gene:

Gene:
SAMHD1
Ensembl Gene ID:
ENSAPLG00000014604
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015235
6933971 - 6954372
20402
ENSAPLT00000041120
6932929 - 6955479
22551
ENSAPLT00000039187
6935835 - 6955079
19245