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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6954369_6954960_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6954369 - 6954960
Intron Length:
592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAACACTT
5'SS Class:
major
3'SS Sequence:
ATTGTTTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTGCCCTTACAT
Flanking Amino Acid:
PSCKQRLSFNNVFLIR*
Intron Amino Acid Position:
533

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.2
69.2
41.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.1
0.72
0.8
77
36.7
Minor 5ss
45.2
-0.5
3.2
66.3
38.7
Minor BPS
61.5
0.44
1.8
78.84
42.9

Associated Gene:

Gene:
SAMHD1
Ensembl Gene ID:
ENSAPLG00000014604
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039187
6935835 - 6955079
19245