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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6966420_6970546_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6966420 - 6970546
Intron Length:
4127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTTTAATAACT
Flanking Amino Acid:
FLPVWSHLYRFLRNIFILSC
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1
83.5
28.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
89.8
0.89
0.7
85
29
Minor 5ss
45.3
-0.5
2.8
64.3
39.9
Minor BPS
61.7
0.45
1.9
84.59
35.1

Associated Gene:

Gene:
PIGU
Ensembl Gene ID:
ENSAPLG00000014171
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014800
6963305 - 6985037
21733