About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_696656_697036_R


Intron Information:

Intron Rank:
19

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
696656 - 697036

Intron Length:
381

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTTTGTGTG

5'SS Class:
major

3'SS Sequence:
CTCTGTCTCATAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
ACTTGAT

U12 Branch Point Sequence:
ATTACAATGACT

Flanking Amino Acid:
IRIACIFGMQLERDAYVQAL

Intron Amino Acid Position:
965

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
75.5
0.6
1.2
70
40.5

Major BPS
75
0.62
1
65.3
41.5

Major PPT
73.4
0.53
0.8
68.1
32.2

Minor 5ss
38.7
-1.3
3
49.5
46.8

Minor BPS
51.6
0.13
2
77.15
38.5

Associated Gene:

Gene:
ARFGEF2

Ensembl Gene ID:

Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

684618 - 716787
32170

684679 - 715920
31242