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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6970672_6972803_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6970672 - 6972803
Intron Length:
2132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
GTCCTCTTACTC
Flanking Amino Acid:
FYTIPLAVKLKEHPVFFMFV
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
84.6
33.2
Major BPS
69.2
0.48
1
61
37.1
Major PPT
87.2
0.84
0.6
85.9
21.1
Minor 5ss
41.1
-1
2.8
51.8
38.9
Minor BPS
52
0.04
1.6
59.66
40

Associated Gene:

Gene:
PIGU
Ensembl Gene ID:
ENSAPLG00000014171
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014800
6963305 - 6985037
21733