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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6973571_6975512_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6973571 - 6975512
Intron Length:
1942

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TGAGGGGTATCT
Flanking Amino Acid:
FAPALLYLLQRQFIPIKPKS
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
27.2
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
87.1
0.84
0.8
84.6
36
Minor 5ss
33.7
-1.9
3.4
48.7
47.5
Minor BPS
32.8
-1.2
2.7
52.74
48

Associated Gene:

Gene:
PIGU
Ensembl Gene ID:
ENSAPLG00000014171
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014800
6963305 - 6985037
21733