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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6975611_6977316_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6975611 - 6977316
Intron Length:
1706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGCAA
5'SS Class:
major
3'SS Sequence:
TTTCTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TATTACTTACAA
Flanking Amino Acid:
IAFFFLATIKGSAFLSAVFL
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1.2
65.8
41.7
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
90
0.9
0.6
85
22.5
Minor 5ss
35.6
-1.6
3.3
47
48.3
Minor BPS
56.3
0.19
1.9
71.22
40.2

Associated Gene:

Gene:
PIGU
Ensembl Gene ID:
ENSAPLG00000014171
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014800
6963305 - 6985037
21733