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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6981322_6982653_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6981322 - 6982653
Intron Length:
1332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
CTGCCTTGTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TCTTTGGTCATT
Flanking Amino Acid:
LAIQDYNKVVFKKQKLLIEL
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
67.7
40.2
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
73.2
0.52
1
67.7
37.8
Minor 5ss
43.4
-0.7
2.9
53
46
Minor BPS
40.8
-0.6
2.8
66.07
45.7

Associated Gene:

Gene:
PIGU
Ensembl Gene ID:
ENSAPLG00000014171
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014800
6963305 - 6985037
21733