About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6983746_6984947_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6983746 - 6984947
Intron Length:
1202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGTATG
5'SS Class:
major
3'SS Sequence:
TGCTCTCTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
CAGTATTTGACA
Flanking Amino Acid:
SPYSGAIFHETPLIIYLFHF
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.2
73.9
42.7
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
74.8
0.56
0.8
73.3
31.7
Minor 5ss
34.3
-1.8
2.9
42.3
44.5
Minor BPS
54
0.12
1.5
59.59
40.5

Associated Gene:

Gene:
PIGU
Ensembl Gene ID:
ENSAPLG00000014171
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014800
6963305 - 6985037
21733