Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_7036831_7039550_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7036831 - 7039550

Intron Length:

2720

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGAGA

5'SS Class:

strong_major

3'SS Sequence:

CCCACTTTATTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAC

U12 Branch Point Sequence:

TTCATCAGAAAT

Flanking Amino Acid:

ETNAPVVAGQSNETKENCEK

Intron Amino Acid Position:

1900

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.94

0.8

78.7

37.2

Major BPS

81.5

0.78

0.9

71.6

36.1

Major PPT

66.4

0.37

0.9

65.6

34.6

Minor 5ss

31.6

-2.1

3.1

45.7

Minor BPS

46.9

-0.1

1.8

67.8

42.3

Associated Gene:

Gene:

NCOA6

Ensembl Gene ID:

ENSAPLG00000013856

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014448

7033323 - 7064440

31118

ENSAPLT00000033282

7033323 - 7064440

31118